Kaiju web server - Submit Job

Fast and sensitive taxonomic classification for metagenomics

Databases used by the web server:
nr_euk 2021-02-24 (61GB)
nr 2021-02-24 (52GB)
refseq 2021-02-26 (20GB)
progenomes 2021-03-02 (19GB)

Newer databases:
nr_euk 2022-03-10 (71GB)
nr 2022-03-10 (59GB)
refseq 2022-03-23 (24GB)
fungi 2022-03-29 (2.9GB)
viruses 2022-03-29 (226MB)
plasmids 2022-04-10 (966MB)
rvdb 2022-04-07 (983MB)

Older databases:
viruses 2021-02-24 (204MB)
plasmids 2021-03-05 (749MB)
rvdb 2021-03-05 (1.2GB)
fungi 2021-03-04 (2.4GB)
nr_euk 2020-05-25 (54GB)
nr 2020-05-25 (47GB)
refseq 2020-05-25 (17GB)
progenomes 2020-05-25 (20GB)
viruses 2020-05-25 (172MB)
plasmids 2020-05-25 (619MB)
rvdb 2020-05-25 (983MB)

The files also contain nodes.dmp and names.dmp.

Jobs in queue: 56

Web server - Submit job

Use the form to upload fastq/fasta file(s) and choose options.
Once uploading is completed, press the Submit button at the bottom of the page.
Only upload one data set at a time.

File with sequencing reads *
Job Name
You can give a custom name to your submission.

e-mail
Receive a notification after your submission has been processed. [?]

Nucleotide sequences must be in compressed FASTA or FASTQ format [?]
File name: Progress:
Upload a second file for paired-end sequencing
Reads must be in the same order as in the first file. File name: Progress:

Options

Reference Database
RefSeq Genomes - proteins from completely assembled RefSeq genomes: Bacteria, Archaea Viruses
proGenomes - proteins from the representative genomes in proGenomes: Bacteria, Archaea, Viruses.
NCBI BLAST nr - non-redundant protein database: Bacteria, Archaea, Viruses
NCBI BLAST nr +euk - as above, but also including fungi and microbial eukaryotes.

SEG filter
Filter low complexity protein query sequences

Run mode
MEM - for maximum exact matches. Greedy - allows mismatches.

Minimum match length
Only applicable for Greedy mode:
Minimum match score
Allowed mismatches
max. E-value

Uploaded files are deleted immediatly after processing is completed.
Result files are available for download for at least 30 days after submission.