Databases used by the web server:
nr_euk 2021-02-24 (61GB)
nr 2021-02-24 (52GB)
refseq 2021-02-26 (20GB)
progenomes 2021-03-02 (19GB)
Newer databases:
2022:
nr_euk 2022-03-10 (71GB)
nr 2022-03-10 (59GB)
refseq 2022-03-23 (24GB)
fungi 2022-03-29 (2.9GB)
viruses 2022-03-29 (226MB)
plasmids 2022-04-10 (966MB)
rvdb 2022-04-07 (983MB)
2023:
nr_euk 2023-05-10 (82GB)
nr 2023-05-10 (67GB)
refseq 2023-05-23 (30GB)
progenomes 2023-05-25 (66GB)
fungi 2023-05-06 (3.4GB)
viruses 2023-05-26 (251MB)
plasmids 2023-05-26 (1.4GB)
rvdb 2023-05-26 (16GB)
Older databases:
viruses 2021-02-24 (204MB)
plasmids 2021-03-05 (749MB)
rvdb 2021-03-05 (1.2GB)
fungi 2021-03-04 (2.4GB)
nr_euk 2020-05-25 (54GB)
nr 2020-05-25 (47GB)
refseq 2020-05-25 (17GB)
progenomes 2020-05-25 (20GB)
viruses 2020-05-25 (172MB)
plasmids 2020-05-25 (619MB)
rvdb 2020-05-25 (983MB)
The files also contain nodes.dmp and names.dmp.
Web server - Submit job
The web server will shut down by end of July 2024!
Submission of new jobs will not be possible after end of June 2024.
Use the form to upload fastq/fasta file(s) and choose options.
Once uploading is completed, press the Submit button at the bottom of the page.
Only upload one data set at a time.
| Job Name | |
|---|---|
| You can give a custom name to your submission. | |
| Receive a notification after your submission has been processed. [?] | |
| File with sequencing reads * | |
| Nucleotide sequences must be in compressed FASTA or FASTQ format [?] | |
|
File name: Progress: | |
Options
| Reference Database | ||
|---|---|---|
| SEG filter | ||
| Run mode | ||
|
| ||
| Minimum match length | ||
| Only applicable for Greedy mode: | ||
| Minimum match score | ||
| Allowed mismatches | ||
| max. E-value | ||
Uploaded files are deleted immediatly after processing is completed.
Result files are available for download for at least 30 days after submission.